A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15954957



Internal ID19680211
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr16:68631320..68873389hg38UCSC Ensembl
chr16:68665223..68907292hg19UCSC Ensembl
Cytoband16q22.1
Allele length
AssemblyAllele length
hg38242070
hg19242070
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4234971
Supporting Variants
Samples
Known GenesCDH1, CDH3, TANGO6
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15954957
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000046


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