A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15953808



Internal ID19679062
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr13:24558458..24762885hg38UCSC Ensembl
chr13:25132596..25337023hg19UCSC Ensembl
Cytoband13q12.12
Allele length
AssemblyAllele length
hg38204428
hg19204428
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4229533
Supporting Variants
Samples
Known GenesATP12A, TPTE2P6
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15953808
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000046


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