A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15953091



Internal ID20025031
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr12:40698253..40787341hg38UCSC Ensembl
chr12:41092055..41181143hg19UCSC Ensembl
Cytoband12q12
Allele length
AssemblyAllele length
hg3889089
hg1989089
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4204080
Supporting Variants
Samples
Known GenesCNTN1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15953091
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000046


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