A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15952162



Internal ID20024102
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr10:94821068..95350972hg38UCSC Ensembl
chr10:96580825..97110729hg19UCSC Ensembl
Cytoband10q23.33
Allele length
AssemblyAllele length
hg38529905
hg19529905
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4186433
Supporting Variants
Samples
Known GenesC10orf129, CYP2C19, CYP2C8, CYP2C9, PDLIM1, SORBS1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15952162
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000046


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