A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15949447



Internal ID20021387
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr12:116569057..116571711hg38UCSC Ensembl
chr12:117006862..117009516hg19UCSC Ensembl
Cytoband12q24.22
Allele length
AssemblyAllele length
hg382655
hg192655
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4229072
Supporting Variants
Samples
Known GenesMAP1LC3B2
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15949447
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000046


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