A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15948528



Internal ID19673782
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chrX:141836914..141843514hg38UCSC Ensembl
chrX:140924700..140931300hg19UCSC Ensembl
CytobandXq27.2
Allele length
AssemblyAllele length
hg386601
hg196601
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4037484
Supporting Variants
Samples
Known GenesMAGEC3
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15948528
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000049


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