A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15947057



Internal ID20018997
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chrX:123279246..123290307hg38UCSC Ensembl
chrX:122413097..122424158hg19UCSC Ensembl
CytobandXq25
Allele length
AssemblyAllele length
hg3811062
hg1911062
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4049716
Supporting Variants
Samples
Known GenesGRIA3
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15947057
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer