A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15945582



Internal ID20017522
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chrX:99442541..99827607hg38UCSC Ensembl
chrX:98697539..99082605hg19UCSC Ensembl
CytobandXq22.1
Allele length
AssemblyAllele length
hg38385067
hg19385067
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4035298
Supporting Variants
Samples
Known GenesXRCC6P5
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15945582
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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