A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15945061



Internal ID20017001
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chrX:115565795..115573159hg38UCSC Ensembl
chrX:114800121..114807474hg19UCSC Ensembl
CytobandXq23
Allele length
AssemblyAllele length
hg387365
hg197354
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4032570
Supporting Variants
Samples
Known GenesPLS3
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15945061
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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