A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15942091



Internal ID20014031
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chrX:15370413..15377398hg38UCSC Ensembl
chrX:15388535..15395520hg19UCSC Ensembl
CytobandXp22.2
Allele length
AssemblyAllele length
hg386986
hg196986
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4033862
Supporting Variants
Samples
Known GenesFIGF, PIR-FIGF
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15942091
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000139


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