A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15940150



Internal ID20012090
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chrX:23115418..23273458hg38UCSC Ensembl
chrX:23133535..23291575hg19UCSC Ensembl
CytobandXp22.11
Allele length
AssemblyAllele length
hg38158041
hg19158041
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4036247
Supporting Variants
Samples
Known GenesLOC100873065
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15940150
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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