A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15939907



Internal ID19665161
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr9:5516860..5549187hg38UCSC Ensembl
chr9:5516860..5549187hg19UCSC Ensembl
Cytoband9p24.1
Allele length
AssemblyAllele length
hg3832328
hg1932328
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4159989
Supporting Variants
Samples
Known GenesPDCD1LG2
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15939907
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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