A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15938910



Internal ID19664164
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr9:112884078..112891140hg38UCSC Ensembl
chr9:115646358..115653420hg19UCSC Ensembl
Cytoband9q32
Allele length
AssemblyAllele length
hg387063
hg197063
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4186760
Supporting Variants
Samples
Known GenesSLC46A2
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15938910
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer