A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15938616



Internal ID20010556
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr9:3394714..3442245hg38UCSC Ensembl
chr9:3394714..3442245hg19UCSC Ensembl
Cytoband9p24.2
Allele length
AssemblyAllele length
hg3847532
hg1947532
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4154396
Supporting Variants
Samples
Known GenesRFX3
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15938616
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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