A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15938531



Internal ID20010471
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr9:136453257..136480279hg38UCSC Ensembl
chr9:139347709..139374731hg19UCSC Ensembl
Cytoband9q34.3
Allele length
AssemblyAllele length
hg3827023
hg1927023
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4176204
Supporting Variants
Samples
Known GenesSEC16A
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15938531
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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