A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15937076



Internal ID20009016
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr9:105336009..105343849hg38UCSC Ensembl
chr9:108098290..108106130hg19UCSC Ensembl
Cytoband9q31.1
Allele length
AssemblyAllele length
hg387841
hg197841
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4178976
Supporting Variants
Samples
Known GenesSLC44A1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15937076
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000048


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