A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15932405



Internal ID20004345
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr9:28127919..28135924hg38UCSC Ensembl
chr9:28127917..28135922hg19UCSC Ensembl
Cytoband9p21.1
Allele length
AssemblyAllele length
hg388006
hg198006
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4180263
Supporting Variants
Samples
Known GenesLINGO2
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15932405
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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