A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15931176



Internal ID20003116
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr8:39923171..39927299hg38UCSC Ensembl
chr8:39780690..39784818hg19UCSC Ensembl
Cytoband8p11.21
Allele length
AssemblyAllele length
hg384129
hg194129
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4166487
Supporting Variants
Samples
Known GenesIDO1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15931176
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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