A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15925625



Internal ID19650879
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr8:55633541..55777858hg38UCSC Ensembl
chr8:56546100..56690417hg19UCSC Ensembl
Cytoband8q12.1
Allele length
AssemblyAllele length
hg38144318
hg19144318
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4169013
Supporting Variants
Samples
Known GenesTGS1, TMEM68
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15925625
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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