A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15924639



Internal ID19996579
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr7:141578300..141584371hg38UCSC Ensembl
chr7:141278100..141284171hg19UCSC Ensembl
Cytoband7q34
Allele length
AssemblyAllele length
hg386072
hg196072
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4157698
Supporting Variants
Samples
Known GenesAGK
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15924639
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.009311


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