A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15916842



Internal ID19988782
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr6:166671027..166679047hg38UCSC Ensembl
chr6:167084515..167092535hg19UCSC Ensembl
Cytoband6q27
Allele length
AssemblyAllele length
hg388021
hg198021
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4135116
Supporting Variants
Samples
Known GenesRPS6KA2
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15916842
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000048


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