A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15915056



Internal ID19986996
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr6:124566781..124569455hg38UCSC Ensembl
chr6:124887927..124890601hg19UCSC Ensembl
Cytoband6q22.31
Allele length
AssemblyAllele length
hg382675
hg192675
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4146328
Supporting Variants
Samples
Known GenesNKAIN2
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15915056
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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