A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15913285



Internal ID19985225
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr6:89877911..89920895hg38UCSC Ensembl
chr6:90587630..90630614hg19UCSC Ensembl
Cytoband6q15
Allele length
AssemblyAllele length
hg3842985
hg1942985
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4133589
Supporting Variants
Samples
Known GenesGJA10
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15913285
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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