A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15910563



Internal ID19982503
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr6:39100790..39105112hg38UCSC Ensembl
chr6:39068566..39072888hg19UCSC Ensembl
Cytoband6p21.2
Allele length
AssemblyAllele length
hg384323
hg194323
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4149717
Supporting Variants
Samples
Known GenesSAYSD1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15910563
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.006638


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