A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15908082



Internal ID19980022
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr5:177684174..177718524hg38UCSC Ensembl
chr5:177111175..177145525hg19UCSC Ensembl
Cytoband5q35.3
Allele length
AssemblyAllele length
hg3834351
hg1934351
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4118530
Supporting Variants
Samples
Known Genes
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15908082
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.012408


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