A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15908042



Internal ID19979982
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr5:176987033..176998246hg38UCSC Ensembl
chr5:176414034..176425247hg19UCSC Ensembl
Cytoband5q35.2
Allele length
AssemblyAllele length
hg3811214
hg1911214
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4119407
Supporting Variants
Samples
Known GenesUIMC1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15908042
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.001567


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