A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15907879



Internal ID19979819
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr6:36619577..36627166hg38UCSC Ensembl
chr6:36587354..36594943hg19UCSC Ensembl
Cytoband6p21.31
Allele length
AssemblyAllele length
hg387590
hg197590
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4522892
Supporting Variants
Samples
Known GenesMIR3925
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15907879
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000049


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer