A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15905999



Internal ID19977939
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr5:119356358..119367327hg38UCSC Ensembl
chr5:118692053..118703022hg19UCSC Ensembl
Cytoband5q23.1
Allele length
AssemblyAllele length
hg3810970
hg1910970
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4126729
Supporting Variants
Samples
Known GenesTNFAIP8
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15905999
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000599


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