A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15904170



Internal ID19976110
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr5:144438446..144446859hg38UCSC Ensembl
chr5:143818009..143826422hg19UCSC Ensembl
Cytoband5q31.3
Allele length
AssemblyAllele length
hg388414
hg198414
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4116861
Supporting Variants
Samples
Known GenesKCTD16
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15904170
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000145


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