A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15902071



Internal ID19974011
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr5:111547715..111577760hg38UCSC Ensembl
chr5:110883413..110913457hg19UCSC Ensembl
Cytoband5q22.1
Allele length
AssemblyAllele length
hg3830046
hg1930045
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4113594
Supporting Variants
Samples
Known GenesSTARD4-AS1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15902071
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000047


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