A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15898945



Internal ID19970885
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr5:27456987..27473555hg38UCSC Ensembl
chr5:27457094..27473662hg19UCSC Ensembl
Cytoband5p14.1
Allele length
AssemblyAllele length
hg3816569
hg1916569
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4128385
Supporting Variants
Samples
Known GenesLINC01021
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15898945
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000098


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