A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15890860



Internal ID19616114
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr4:47580407..47665035hg38UCSC Ensembl
chr4:47582424..47667052hg19UCSC Ensembl
Cytoband4p12
Allele length
AssemblyAllele length
hg3884629
hg1984629
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4102265
Supporting Variants
Samples
Known GenesATP10D, CORIN, MIR8053
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15890860
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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