A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15888040



Internal ID19959980
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr4:20435592..20450933hg38UCSC Ensembl
chr4:20437215..20452556hg19UCSC Ensembl
Cytoband4p15.31
Allele length
AssemblyAllele length
hg3815342
hg1915342
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4092644
Supporting Variants
Samples
Known GenesSLIT2
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15888040
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000092


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