A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15887620



Internal ID19959560
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr3:196959812..196970787hg38UCSC Ensembl
chr3:196686683..196697658hg19UCSC Ensembl
Cytoband3q29
Allele length
AssemblyAllele length
hg3810976
hg1910976
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4105552
Supporting Variants
Samples
Known GenesPIGZ
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15887620
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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