A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15887089



Internal ID19612343
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr3:172058772..172064202hg38UCSC Ensembl
chr3:171776562..171781992hg19UCSC Ensembl
Cytoband3q26.31
Allele length
AssemblyAllele length
hg385431
hg195431
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4094925
Supporting Variants
Samples
Known GenesFNDC3B
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15887089
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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