A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15884387



Internal ID19609642
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr3:156679772..156681942hg38UCSC Ensembl
chr3:156397561..156399731hg19UCSC Ensembl
Cytoband3q25.31
Allele length
AssemblyAllele length
hg382171
hg192171
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4094515
Supporting Variants
Samples
Known GenesTIPARP
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15884387
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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