A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15883601



Internal ID19955541
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr3:142082338..142094303hg38UCSC Ensembl
chr3:141801180..141813145hg19UCSC Ensembl
Cytoband3q23
Allele length
AssemblyAllele length
hg3811966
hg1911966
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4111857
Supporting Variants
Samples
Known GenesTFDP2
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15883601
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000048


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