A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15883461



Internal ID19608715
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr3:154808210..155307711hg38UCSC Ensembl
chr3:154525999..155025500hg19UCSC Ensembl
Cytoband3q25.2
Allele length
AssemblyAllele length
hg38499502
hg19499502
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4520648
Supporting Variants
Samples
Known GenesLOC100507537, MME
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15883461
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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