A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15882589



Internal ID19954529
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr3:73495751..73500833hg38UCSC Ensembl
chr3:73544902..73549984hg19UCSC Ensembl
Cytoband3p13
Allele length
AssemblyAllele length
hg385083
hg195083
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4083258
Supporting Variants
Samples
Known GenesPDZRN3
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15882589
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000092


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