A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15881122



Internal ID19953062
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr3:61643968..61654655hg38UCSC Ensembl
chr3:61629642..61640329hg19UCSC Ensembl
Cytoband3p14.2
Allele length
AssemblyAllele length
hg3810688
hg1910688
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4073729
Supporting Variants
Samples
Known GenesPTPRG
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15881122
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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