A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15878999



Internal ID19950939
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr3:60349334..60440475hg38UCSC Ensembl
chr3:60335065..60426208hg19UCSC Ensembl
Cytoband3p14.2
Allele length
AssemblyAllele length
hg3891142
hg1991144
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4089772
Supporting Variants
Samples
Known GenesFHIT
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15878999
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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