A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15878933



Internal ID19950873
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr3:14969407..14987199hg38UCSC Ensembl
chr3:15010914..15028706hg19UCSC Ensembl
Cytoband3p25.1
Allele length
AssemblyAllele length
hg3817793
hg1917793
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4085857
Supporting Variants
Samples
Known GenesNR2C2
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15878933
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000047


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