A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15877255



Internal ID19602509
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr3:5124074..5136141hg38UCSC Ensembl
chr3:5165759..5177826hg19UCSC Ensembl
Cytoband3p26.1
Allele length
AssemblyAllele length
hg3812068
hg1912068
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4080337
Supporting Variants
Samples
Known GenesARL8B
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15877255
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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