A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15876598



Internal ID19948538
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr3:4233040..4308772hg38UCSC Ensembl
chr3:4274724..4350456hg19UCSC Ensembl
Cytoband3p26.1
Allele length
AssemblyAllele length
hg3875733
hg1975733
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4081889
Supporting Variants
Samples
Known GenesSETMAR
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15876598
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer