A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15875963



Internal ID19947903
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr2:176331906..176334608hg38UCSC Ensembl
chr2:177196634..177199336hg19UCSC Ensembl
Cytoband2q31.1
Allele length
AssemblyAllele length
hg382703
hg192703
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4077484
Supporting Variants
Samples
Known GenesMTX2
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15875963
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000092


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