A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15875880



Internal ID19947820
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr2:174435750..174441999hg38UCSC Ensembl
chr2:175300478..175306727hg19UCSC Ensembl
Cytoband2q31.1
Allele length
AssemblyAllele length
hg386250
hg196250
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4090989
Supporting Variants
Samples
Known GenesGPR155
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15875880
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000092


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