A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15872828



Internal ID19598082
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr2:209534439..209857201hg38UCSC Ensembl
chr2:210399163..210721925hg19UCSC Ensembl
Cytoband2q34
Allele length
AssemblyAllele length
hg38322763
hg19322763
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4091427
Supporting Variants
Samples
Known GenesMAP2, UNC80
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15872828
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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