A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15872277



Internal ID19597531
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr2:149580359..149582052hg38UCSC Ensembl
chr2:150436873..150438566hg19UCSC Ensembl
Cytoband2q23.2
Allele length
AssemblyAllele length
hg381694
hg191694
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4078633
Supporting Variants
Samples
Known GenesMMADHC
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15872277
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


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