A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15871636



Internal ID19596890
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr2:129716902..130562625hg38UCSC Ensembl
chr2:130474475..131320198hg19UCSC Ensembl
Cytoband2q21.1
Allele length
AssemblyAllele length
hg38845724
hg19845724
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4079560
Supporting Variants
Samples
Known GenesCCDC115, CCDC74B, CFC1B, CYP4F62P, FAR2P1, FAR2P2, IMP4, LOC389033, LOC646743, MED15P9, MZT2B, POTEF, POTEI, PTPN18, RAB6C, RAB6C-AS1, SMPD4, TISP43, TUBA3E
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15871636
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000092


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