A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15871527



Internal ID19943467
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr2:168131329..168136186hg38UCSC Ensembl
chr2:168987839..168992696hg19UCSC Ensembl
Cytoband2q24.3
Allele length
AssemblyAllele length
hg384858
hg194858
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4077618
Supporting Variants
Samples
Known GenesSTK39
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15871527
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequency0.000046


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer